Publications

Stavreva DA, Coulon A, Sung MH, John S, Baek S, Stixova L, Tesikova M, Hakim O, Miranda T, Hawkins M, Stamatoyannopoulos JA, Chow CC & Hager GL. Dynamics of chromatin accessibility and long-range interactions in response to glucocorticoid pulsing. Genome Research (in press)

CC Chang, CC Chow, LCAM Tellier, S Vattikuti, SM Purcell, and James J Lee. Second-generation PLINK: rising to the challenge of larger and richer datasets. GigaScience 4, 559 (2015).

A Coulon, ML Ferguson, V de Turris, M Palangat, CC Chow, and DR Larson. Kinetic competition during the transcription cycle results in stochastic RNA processing. eLIFE 3, e03939 (2014).

S Vattikuti, JJ Lee, CC Chang, SDH Hsu, and CC Chow. Applying compressed sensing to genome-wide association studies. GigaScience 3:10 (2014).

JA Blackford Jr, KR Brimacombe, EJ Dougherty, M Pradhan, M Shen, Z Li , DS Auld, CC Chow, CP Austin, SS Simons Jr., Research Resource: Modulators of glucocorticoid receptor activity identified by a new high-throughput screening assay. Molecular Endocrinology, 28:1194-1206 (2014).

JJ Lee and CC Chow Conditions for the validity of SNP-based heritability estimation. Human Genetics 95:89-109 (2014).

CC Chow and KD Hall Short and long-term energy intake patterns and their implications for human body weight regulation. Physiology & Behavior (2014)

R Zhu et al. A kinase-independent activity of Cdk9 modulates glucocorticoid receptor-mediated gene induction. Biochemistry 53:1753-1767 (2014).

JJ Lee and CC Chow The causal meaning of Fisher's average effect. Genetics Research 95:89-109 (2013).

A Coulon, CC Chow, RH Singer, DR Larson Eukaryotic transcriptional dynamics: from single molecules to cell populations. Nat Gen Reviews (2013).

Weinstein et al. A new method for determining gastric acid output using a wireless pH-sensing capsule. Aliment Pharmacol Ther 37: 1198 (2013)

Adler-Wailes et al. Sex-associated differences in free fatty acid flux of obese adolescents J Clin Endocrinol Metab (2013).

MA Buice and CC Chow. Dynamic finite size effects in spiking neural networks. PLoS Comp Bio 9:e1002872 (2013).

Z Zhang, Y Sun, YW Cho, CC Chow, SS Simons. PA1 Protein, a New Competitive Decelerator Acting at More than One Step to Impede Glucocorticoid Receptor-mediated Transactivation. J Biol Chem:42-58 (2012).

JA Blackford, C Guo, R Zhu, EJ Dourgherty, CC Chow and SS Simons. Identification of Location and Kinetically Defined Mechanism of Cofactors and Reporter Genes in the Cascade of Steroid-regulated Transactivation. J Biol Chem:40982-95 (2012).

SJ Gotts, CC Chow, A Martin. Repetition priming and repetition suppression: A case for enhanced efficiency through neural synchronization. Cognitive Neuroscience, 3:227-237 (2012).

S Vattikuti, J Guo, CC Chow. Heritability and genetic correlations explained by common SNPs for metabolic syndrome traits. PLoS Genetics 8:e1002637 (2012).

WJ Heuett, BV Miller, SB Racette, JO Holloszy, CC Chow, V Periwal. Bayesian functional integral method for inferring continuous data from discrete measurements. Biophysical Journal, 102:399-406 (2012).

Dougherty EJ, Guo C, Simons SS Jr, Chow CC (2012) Deducing the Temporal Order of Cofactor Function in Ligand-Regulated Gene Transcription: Theory and Experimental Verification. PLoS ONE 7(1): e30225. doi:10.1371/journal.pone.0030225

SS Simons and CC Chow, The road less traveled: New views of steroid receptor action from the path of dose-response curves. Molecular and Cellualar Endocrinology 348:373-382 (2012).

SN Fatakia, S Costanzi, CC Chow, Molecular Evolution of the Transmembrane Domains of G Protein-Coupled Receptors. PLoS ONE 6: e27813 (2011).

M.A. Buice and C.C. Chow, `Effective stochastic behavior in dynamical systems with incomplete incomplete information.' Phys. Rev. E 84:051120 (2011).

Seely J, Chow CC. Role of mutual inhibition in binocular rivalry. J Neurophysiol 106: 2136-2150 (2011).

K.D. Hall, G.Sacks, D. Chandramohan, C.C Chow, C. Wang; S. Gortmaker; B. Swinburn, `Quantifying the effect of energy imbalance on body weight change.' The Lancet 378:826-37 (2011).

C.C. Chow, V. Periwal, G. Csako, M. Ricks, A.B. Courville, B.V. Miller III, G.L. Vega, and A.E. Sumner, `Higher Acute Insulin Response to Glucose May Determine Greater Free Fatty Acid Clearance in African-American Women.' J Clin Endocrinol Metab 96:2455-63 (2011).

K.D. Hall and C.C. Chow, `Estimating changes of free-living energy intake and its confidence interval,' Am J Clin Nutr 94:66-74 (2011).

C.C. Chow, K.M. Ong, E.J. Dougherty, S.S. Simons, `Inferring mechanisms from dose-response curves.' Methods Enzymo 487:465-283 (2011)

A. Milac, A. Anishkin, S.N. Fatakia, C.C. Chow, H.R. Guy and S. Sukharev, `Structural models of TREK channels and their gating mechanism.' Channels 5:1, 23-33 (2011). [PDF]

C.C. Chow and M.A. Buice, 'Path integral methods for stochastic differential equations', arXiv:1009.5966 (2010).

S. Vattikuti and C.C. Chow, 'A computational model for cerebral cortical dysfunction in Autism Spectrum Disorders', Biol Psychiatry 67:672-6798 (2010). [PDF] , Supplemental Information

K.M. Ong, J.A. Blackford, Jr., B.L. Kagen, S.S. Simons, Jr., and C.C. Chow, 'A theoretical framework for gene induction and experimental comparisons', PNAS 107:7107-7112 (2010).

M.A. Buice, J.D. Cowan, and C.C. Chow, 'Systematic Fluctuation Expansion for Neural Network Activity Equations', Neural Comp., 22:377-426 (2010) [PDF]

K.D. Hall, M. Dore, J. Guo, and C.C. Chow, 'The progressive increase of food waste in America', PLoS ONE 4(11): e7940 (2009).

J. Day, J. Rubin, and C.C. Chow, 'Competition between transients in the rate of approach to a fixed point', SIAM J. Appl. Dyn. Sys 8:1523 (2009). [PDF]

L.A. Furchtgott, C.C. Chow, V. Periwal, 'A model of liver regeneration', Biophysical Journal 96:3926-35, (2009). [PDF]

S. Fatakia, S. Costanzi, and C.C. Chow, `Identification of a common binding cavity for G protein-coupled receptors using mutual information and graph theory', PLoS ONE 4(3): e4681 (2009)

G.M. Constantine, J. Bartels, C.C. Chow, G. Clermont, Y. Vodovotz, `A linear code parameter search algorithm with applications to immunology', Computational Optimization and Applications, 42:155-171 (2009). [PDF]

V. Periwal, C.C. Chow, R.N. Bergman, M. Ricks, G.L. Vega, and A.E. Sumner, `Evaluation of quantitative models of the effect of insuln on lipolysis and glucose disposal', Am J Physiol: Regulatory Integrative Comp Physiol, 295 , R1089-R1096 (2008). [PDF]

C.C. Chow and K.D. Hall, `The dynamics of human body weight change', PLoS Computational Biology 4 , e1000045 (2008).

R. Kumar, CC Chow, JD Bartels, G. Clermont, Y. Vodovotz. `A mathematical simulation of the inflammatory response to anthrax infection'. Shock 29 , 104-111 (2008). [PDF]

H. Soula and C.C. Chow, `Stochastic dynamics of a finite-size spiking neural network', Neural Comp., 19, 3262-92 (2007). [q-bio.NC/0701042 arXiv.org] [PDF]

M.A. Buice and C.C. Chow, `Correlations, fluctuations and stability of a finite-size network of coupled oscillators'. Phys. Rev. E 76 031118 (2007) [arXiv:0704.1650] [PDF]

Carson C. Chow (2007) Multiple scale analysis. Scholarpedia, 2(10):1617

K.D. Hall, H.L. Bain and C.C. Chow, `How adaptations of substrate utilization regulate body composition', International Journal of Obesity, 31 , 1378-83 (2007). [PDF]

M. Shafi, Y. Zhou, J. Quintana, C. Chow, J. Fuster, and M. Bodner,'Variability in neuronal activity in primate cortex during working memory tasks', Neuroscience, 146 , 1082-1108 (2007) [PDF]

E. Hildebrand, M.A. Buice, and C.C. Chow, `Kinetic theory of coupled oscillators,' Physical Review Letters 98 , 054101 (2007) [PRL Online] [nlin.CD/061209 on arXiv.org] [PDF]

J. Day, J. Rubin, Y. Vodovotz, PhD; C.C. Chow, A.M. Reynolds, G. Clermont, `A reduced mathematical model of the acute inflammatory response: Capturing scenarios of repeated endotoxin administration,' Journal of Theoretical Biology . 242, 237-256 (2006) [PDF]

Y. Kim, Y. Sun, C.C. Chow, Y.G. Pommier, and S.S.~Simons, `Effects of Acetylation, Polymerase Phosphorylation, and DNA Unwinding on Glucocorticoid Receptor Transactivation,' Journal of Steroid Biochemistry and Molecular Biology 100, 3-17 (2006) [PDF]

V. Periwal and C.C. Chow, 'Patterns in food intake correlate with body mass index', American Journal of Physiology: Endocrinology and Metabolism, 291 929-936 (2006) [PDF]

Y. Vodovotz, C.C. Chow, J. Bartels, C. Lagoa, J.M. Prince, R.M. Levy, R. Kumar, J. Day, J. Rubin, G. Constantine, T.R. Billiar, M.P. Fink, G. Clermont, `In silico models of acute inflammation in animals'. Shock 26 , 235-44 (2006) [PDF]

C.C. Chow and S. Coombes, 'Existence and Wandering of bumps in a spiking neural network model'. SIAM Journal on Applied Dynamical Systems 5, 552-574 (2006) [PDF]

S. Moldakarimov, J.E. Rollenhagen, C.R. Olson, and C.C. Chow, ' Competitive dynamics in cortical responses to visual stimuli', Journal of Neurophysiology 94, 3388-3396 (2005) [PDF]

C.C. Chow, G. Clermont, R. Kumar, C. Lagoa, Z. Tawadrous, D. Gallo, B. Betten, J. Bartels, G. Constantine, M.P. Fink, T.R. Billiar, and Y. Vodovotz, `The acute inflammtory response in diverse shock states', Shock 24, 74-84 (2005) [PDF]

Y. Guo and C.C. Chow, `Existence and stability of standing pulses in neural networks: I. Existence', SIAM Journal on Applied Dynamical Systems 4, 217-248 (2005) [PDF]

Y. Guo and C.C. Chow, `Existence and stability of standing pulses in neural networks: II. Stability', SIAM Journal on Applied Dynamical Systems 4, 249-281 (2005) [PDF]

J.E. Rubin, R.C. Gerkin, G.-Q. Bi, and C.C. Chow, `Calcium time course as a signal for spike-timing dependent plasticity', Journal of Neurophysiology 93 , 2600-2613 (2005). [PDF]

Y. Vodovotz, P.K. Kim, E.Z. Bagci, G.B. Ermentrout, C.C. Chow, I. Bahar, T.R. Billiar, `Inflammatory modulation of hepatocyte apoptosis by nitric oxide: in vivo, in vitro, and in silico studies'. Curr Mol Med 32 , 753-762 , (2004). [PDF]

Y. Vodovotz, G. Clermont, C. Chow, and G. An, ` Mathematical models of the acute inflammatory response', Current Opinions in Critical Care 10 383-390 (2004). [PDF]

G. Clermont, J. Bartels, R. Kumar, G. Constantine, Y. Vodovotz, and C. Chow, `In silico design of clinical trials: A method coming of age', Critical Care Medicine 32 , 2061-2070 (2004). [PDF]

R. Kumar, G. Clermont, Y. Vodovotz, and C.C. Chow, `The dynamics of acute inflammation', Journal of Theoretical Biology 230 , 345-155 (2004). [PDF]

G.B. Ermentrout and C.C. Chow, `Modeling Neural Oscillations', Physiology and Behavior, 77 , 629-633 (2002). [PDF]

C.C. Chow, D.Z. Jin, and A. Treves, `Is the world full of circles?', Journal of Vision 2 , 571-576 (2002). [PDF]

V.A. Alvarez, C.C. Chow, E.J. Van Bockstaele, and J.T. Williams, `Frequency-dependent synchrony in locus ceruleus: Role of electrotonic coupling', Proc. Natl. Acad. Sci. USA 99, 4032-4403 (2002). [PDF]

C.R. Laing and C.C. Chow. `A spiking neuron model for binocular rivalry', J. Comp. Neurosci. 12, 39-53 (2002). [PDF]

B.S. Gutkin, C.R. Laing, C.L. Colby, C.C. Chow, and G.B. Ermentrout. `Turning on and off with excitation: the role of spike-timing asynchrony and synchrony in sustained neural activity', J. Comp. Neurosci. 11, 121-134 (2001). [PDF]

J. Rubin, D. Terman, and C.C. Chow. `Localized Bumps of Activity Sustained by Inhibition in a Two-Layer Thalamic Network', J. Comp Neurosci. 10, 313-331 (2001). [PDF]

C.R. Laing and C.C. Chow, `Stationary bumps in networks of spiking neurons', Neural Comp. 13, 1473-1494 (2001). [PDF]

C.C. Chow and N. Kopell, `Dynamics of spiking neurons with electrical coupling', Neural Comp. 12, 1643-1678 (2000). [PDF]

B. Boghosian, C.C. Chow, and T. Hwa, `Hydrodynamics of the Kuramoto-Sivashinsky equation in two dimensions', Phys. Rev. Lett. 83, 5262-5265 (1999). [PDF]

C.C. Chow, M. Lauk, and J.J. Collins, `The dynamics of quasistatic posture control', Human Movement Sciences 18, 725-740 (1999) [PS gzip]

D.J. Mar, C.C. Chow, W. Gerstner, R.W. Adams, and J.J. Collins, `Noise-shaping in populations of coupled model neurons', Proceedings of the National Academy (US) 96, 10450-10455 (1999). [PDF]

M. Lauk, C.C. Chow, L.A. Lipsitz, S.L. Mitchell, and J.J. Collins, `Assessing Muscle Stiffness from Quiet Stance in Parkinson's Disease', Muscle and Nerve 22, 635-639 (1999). [PS gzip]

C.C. Chow, J.A. White, J. Ritt, and N. Kopell, `Frequency control in synchronized networks of inhibitory neurons', J. Comp. Neurosci. 5, 407-420 (1998). [PDF]

J.J. Collins and C.C. Chow, `It's a small world', (News and Views), Nature 393, 409-410 (1998).

C.C. Chow, `Phase-locking in weakly heterogeneous neuronal networks', Physica D 118, 343-370 (1998). [PDF]

J.A. White, C.C. Chow, J. Ritt, C. Soto-Trevino, and N. Kopell, `Synchronization and oscillatory dynamics in heterogeneous, mutually inhibited neurons', J. Comp. Neurosci. 5, 5-16 (1998). [PDF]

C.C. Chow, T.T. Imhoff, and J.J. Collins, `Enhancing aperiodic stochastic resonance through noise modulation', Chaos 8, 616-620 (1998). [PS gzip]

M. Lauk, C.C. Chow, A.E. Pavlik, J.J. Collins, `Human balance out of equilibrium: nonequilibrium statistical mechanics in posture control', Phys. Rev. Lett. 80, 413-416 (1998). [PDF]

C.C. Chow and J.A. White, `Spontaneous Action Potentials due to Channel Fluctuations', Biophys. J. 71, 3013-3021 (1996). [PS gzip]

C. Heneghan, C.C. Chow, J.J. Collins, T.T. Imhoff, S.B. Lowen, and M.C. Teich, `Information measures quantifying aperiodic stochastic resonance', Phys. Rev. E 54, R2228-R2231 (1996). [PS gzip]

J.J. Collins, C.C. Chow, A.C. Capela, and T.T. Imhoff, `Aperiodic stochastic resonance', Phys. Rev. E. 54, 5575-5584 (1996). [PS gzip]

C.C. Chow, D. Henderson, and H. Segur, `A Generalized Stability Criterion for Resonant Triad Interactions', J. Fluid Mech. 319, 67-76 (1996). [PS gzip]

C.C. Chow and T. Hwa, `Defect-mediated Stability: An Effective Hydrodynamic Theory of Spatiotemporal Chaos', Physica D 84, 494-512 (1995). [PS gzip]

J.J. Collins, C.C. Chow and T. Imhoff, `Stochastic Resonance Without Tuning', Nature 376, 236-238 (1995). [PS gzip]

J.J. Collins, C.C. Chow and T. Imhoff, `Aperiodic Stochastic Resonance in Excitable Systems', Phys. Rev. E 52, R3321-R3324 (1995). [PS gzip]

C.C. Chow and J.J. Collins, `A Pinned Polymer Model of Posture Control', Phys. Rev. E 52, 907-912 (1995). [PDF]

C.C. Chow, `Spatiotemporal Chaos in Nonintegrable Three Wave Interactions', Physica D 81, 237-270 (1995).

C.C. Chow and J.R. Cary, `Integrable Nonlinear Accelerator Lattices', Phys. Rev. Lett. 72, 1196-1199 (1994).

C.C. Chow, S.J. Fromm and H. Segur, `An Analysis of a Hamiltonian Amplitude Equation', Journal of the Physical Society of Japan 62, 1927-1931 (1993).

C.C. Chow and A. Bers, `Chaotic Stimulated Brillouin Scattering in a Finite Length Medium', Phys. Rev. A 47, 5144-5150 (1993).

C.C. Chow, A.K. Ram, A. Bers, `Spatiotemporal Chaos in the Nonlinear Three Wave Interaction', Phys. Rev. Lett. 68, 3379-3382 (1992).

C.C. Chow, V. Fuchs, A. Bers, `Reflection at the Resonance Layer of the Fast Alfven Wave in Ion-Cyclotron Heating', Phys. Fluids B 2, 2185-2190 (1990)

C.C. Chow, V. Fuchs, A. Bers, `The Dispersion Relation for D3He Ion-Cyclotron Resonance Heating', Phys. Fluids B 2, 1089-1091 (1990).

C.C. Chow, A.K. Ram, A. Bers, `Damping of the Fast Alfven Wave in Ion-Cyclotron Heating', Phys. Fluids B 1, 2018-2026 (1989).


CCC Home Page